PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0085s0024.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 519aa    MW: 55347.9 Da    PI: 7.0965
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0085s0024.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.85.2e-1085110227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           +++ C +++rtG C +G +C+F+H+p
  Sphfalx0085s0024.2.p  85 GEPDCVYYMRTGLCGFGQTCRFNHPP 110
                           5799********************97 PP

2zf-CCCH36.21e-11130155227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C+++++tGtCk+G++Ck++H++
  Sphfalx0085s0024.2.p 130 GQPECQYYLKTGTCKFGATCKYHHPR 155
                           789*********************96 PP

3zf-CCCH38.91.4e-12176201227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C +++rtG CkyG +CkF+H+p
  Sphfalx0085s0024.2.p 176 GEKECAYYMRTGSCKYGVTCKFHHPP 201
                           7899********************97 PP

4zf-CCCH35.81.3e-11339365127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +++++C+++++tG Ck+G +C+++H++
  Sphfalx0085s0024.2.p 339 PGQPECQYYMKTGDCKFGITCRYHHPK 365
                           5789*********************96 PP

5zf-CCCH29.61.2e-09387410326
                           S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                            ++C+f+  +G+Ck+G++CkF H+
  Sphfalx0085s0024.2.p 387 APPCSFYNHYGICKFGPTCKFDHP 410
                           689********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.85983111IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-583110IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-786110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-588111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.732128156IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6128155IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-9129155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6131157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4134156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.948174202IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5174201IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10176201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6177200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-5180199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.774338366IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5338365IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8340365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5342366IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.831384412IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-6384411IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-7387410IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MEYYAPAKGA PSSFAGLESS GSESTGLAVL GSIQYDDWRG KHGAPSPGST TADTGPDEAV  60
WQMTMQPHQE GIDAAGQGQF PERLGEPDCV YYMRTGLCGF GQTCRFNHPP NRKMAAAVAR  120
GKGDYPERFG QPECQYYLKT GTCKFGATCK YHHPRDQAGS TGRVQLNGLG LPLRPGEKEC  180
AYYMRTGSCK YGVTCKFHHP PVATFVSPHY TTTGAPTSPA PQPYPPGLPS WPMARAPYLQ  240
PRLQGPSTYS PVLLPSHQGL VSVPAWNTYQ GPVGPMTLPE GQQHPLGTSY LYGTLQQSDS  300
GSVQGTYAPY LQGSSAMGVP AIQPHNTNSQ RDTIFPERPG QPECQYYMKT GDCKFGITCR  360
YHHPKDRAIP SPTCILSPMG LPLRPGAPPC SFYNHYGICK FGPTCKFDHP LLGLTYSPSA  420
SSLTDMPVAP YPTGLSPTAL GPSPVEAPHE GPSGASSSNE PTAPSEEHPG LQQLRDGSDL  480
SVVSASAGAT TTQDLSTQAT ISGMGSRKDN QVESHEIP*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001768387.11e-160predicted protein, partial
SwissprotQ9SWF91e-145ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLC0PR621e-162C0PR62_PICSI; Putative uncharacterized protein
STRINGPP1S102_155V6.11e-165(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-122zinc finger protein 1